CV
[Complete Curriculum Vitae]
Education
- Ph.D. in Computer Science, University of Maryland, College Park, USA, 2020 (expected)
- M.Sc. in Computer Science, Egypt-Japan University of Science and Technology (E-JUST), Alexandria, Egypt, 2012
- B.Sc. in Computer Engineering, University of Alexandria, Egypt, 2009
Work experience
- 2016-Present: Research Assistant
- University of Maryland
- Duties included: Develop tools and algorithms in Genomics, Bioinformatics, Machine Learning
- Supervisor: Hector Corrada Bravo
- Summer 2017: Bioinformatics Intern
- Illumina, San Diego
- Duties included: Developing graph-based population whole genome reference to efficiently study genomic variants in HLA genes
- Supervisor: Sangtae Kim
- 2009-2010: Software Developer
- BadrIT (now part of Incorta)
- Duties included: Developing iPhone and web-based solutions
- Supervisor: Mohamed Hassan
Skills
- Python, Java, C/C++, SQL
- R/Bioconductor
- Tensorflow
- NGS tools, Unix Shell Scripting, High Performance Computing
Publications
Gunady, M.K., Mount, S.M. & Corrada Bravo, H. Yanagi: Fast and interpretable segment-based alternative splicing and gene expression analysis. BMC Bioinformatics 20, 421 (2019) doi:10.1186/s12859-019-2947-6
Ismail, Aya Abdelsalam, et al. "Input-Cell Attention Reduces Vanishing Saliency of Recurrent Neural Networks." arXiv preprint arXiv:1910.12370 (2019).
Talks
August 22, 2017
Conference proceedings talk at Workshop on Algorithms in Bioinformatics (WABI) 2017, Boston, MA
July 06, 2018
Conference abstract talk at Intelligent Systems for Molecular Biology (ISMB) 2018, Chicago, IL
July 19, 2018
talk at University of Maryland, Computer Science Department, College Park, MD
Teaching
